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How do I build and upload a C++ program without the Arduino Library or IDE?

Create a new file called Makefile in your project directory. Populate it with the following contents: TEMPDIR := $(shell mktemp -d) all: avr-g++ -DF_CPU=<CLK> -D__AVR_<PART>__ -...
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Change the fuses of an Arduino Uno (can an Arduino Uno change its own fuses?)

This is technically possible, but tricky. First you'd have to wire up the Arduino with some jumpers in such a way that the 328P can use its ICSP header to reprogram the 16U2/8U2 via that chips own ...
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